`mod triage`¶

module triage¶

triage command: marker-level biological candidate ranking.

The command keeps RADSex-style strict testing and Bayesian marker evidence in one bounded-memory pass over the marker table.

Functions

fn run(params: &TriageParams) -> Result<(), Box<dyn std::error::Error>>¶

fn run_to_arrow(params: &TriageParams) -> Result<Vec<RecordBatch>, Box<dyn std::error::Error>>¶

fn run_to_arrow_with_source<S: MarkerStream>(source: &S, popmap: &Popmap, params: &TriageParams) -> Result<Vec<RecordBatch>, Box<dyn std::error::Error>>¶

fn run_with_source<S: MarkerStream>(source: &S, popmap: &Popmap, params: &TriageParams) -> Result<(), Box<dyn std::error::Error>>¶

Structs and Unions

struct TriageParams¶

markers_table_path: String¶

popmap_file_path: String¶

output_file_path: String¶

min_depth: u16¶

signif_threshold: f32¶

posterior_threshold: f64¶

bayes_factor_threshold: f64¶

prior_probability: f64¶

linked_probability: f64¶

group1: String¶

group2: String¶