`mod distrib`¶

module distrib¶

distrib command: compute marker distribution between two groups.

Functions

fn run(params: &DistribParams) -> Result<(), Box<dyn std::error::Error>>¶: Run distrib against the on-disk markers TSV + popmap referenced by params.

fn run_with_source<S: MarkerStream>(source: &S, popmap: &Popmap, params: &DistribParams) -> Result<(), Box<dyn std::error::Error>>¶: Run distrib against any MarkerStream. Caller supplies the Popmap.

Structs and Unions

struct DistribParams¶

Parameters for the distrib command.

markers_table_path: String¶

popmap_file_path: String¶

output_file_path: String¶

min_depth: u16¶

signif_threshold: f32¶

correction: CorrectionMethod¶

test_method: TestMethod¶

output_bayes: bool¶

group1: String¶

group2: String¶