`mod subset`¶

module subset¶

subset command: extract a filtered subset of markers.

Two-pass filtering with table-order output.

Functions

fn run(params: &SubsetParams) -> Result<(), Box<dyn std::error::Error>>¶

Structs and Unions

struct SubsetParams¶

markers_table_path: String¶

popmap_file_path: String¶

output_file_path: String¶

min_depth: u16¶

signif_threshold: f32¶

correction: crate::test_method::CorrectionMethod¶

test_method: crate::test_method::TestMethod¶

output_bayes: bool¶

output_fasta: bool¶

group1: String¶

group2: String¶

min_group1: u32¶

min_group2: u32¶

max_group1: u32¶

max_group2: u32¶

min_individuals: u32¶

max_individuals: u32¶