`mod signif`¶

module signif¶

signif command: extract markers significantly associated with a group.

Functions

fn run(params: &SignifParams) -> Result<(), Box<dyn std::error::Error>>¶

fn run_with_source<S: MarkerStream>(source: &S, popmap: &Popmap, params: &SignifParams) -> Result<(), Box<dyn std::error::Error>>¶

Structs and Unions

struct SignifParams¶

markers_table_path: String¶

popmap_file_path: String¶

output_file_path: String¶

min_depth: u16¶

signif_threshold: f32¶

correction: CorrectionMethod¶

test_method: TestMethod¶

output_fasta: bool¶

output_bayes: bool¶

group1: String¶

group2: String¶