`mod map`¶

module map¶

map command: align markers to a reference genome and compute metrics.

Pass 1: count markers for Bonferroni (fast, no alignment). Pass 2: align each candidate marker, compute stats, and write in table order.

Functions

fn run(params: &MapParams) -> Result<(), Box<dyn std::error::Error>>¶

Structs and Unions

struct MapParams¶

markers_table_path: String¶

popmap_file_path: String¶

genome_file_path: String¶

output_file_path: String¶

min_depth: u16¶

min_quality: u32¶

min_frequency: f32¶

signif_threshold: f32¶

correction: crate::test_method::CorrectionMethod¶

test_method: crate::test_method::TestMethod¶

output_bayes: bool¶

group1: String¶

group2: String¶